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It does not matter what the temp says as long as you don’t get the error. So now you can use it. Problem solved.
As for the rest of that, yes you can turn the temps off but I have never done it so I have no Idea if there are other things that need to be done. The normal firmware uses thermistor #11 for the 100ohm, or the mk8 style extruders. The firmware I linked for you works with higher value resistors normally. I should have the value for sensor 1 at 0…missed that one in all my firmware, but it has zero effect I use the one from the site myself.
I have no Idea why yours is acting funny I test every board with a 100ohm resistor so it did work with one.